🌵
Drylab
  • BASICS
    • 🌵Welcome to Drylab
  • API
    • 🌵API Overview
    • 💻Endpoints
      • POST /methods/raw
      • POST /methods/sections
      • POST /results/raw
      • POST /results/thematic-blocks
      • POST /results/thematic-modules
      • POST /figure-legends
      • POST /supplement
      • POST /create-conda-env
      • POST /datasets
  • CLI
    • 🌵DryLab CLI
    • 🔧Config file
    • Commands
      • drylab init
      • drylab env
Powered by GitBook
On this page
  • Installation
  • Update
  • Usage
  • Authorisation
  1. CLI

DryLab CLI

The Drylab CLI is a command-line tool to automate reproducibility for computational biology papers. It works locally and integrates with the DryLab API to fetch, interpret, and recreate computational environments and workflows from PDFs or DOIs.

Installation

$ brew tap effieklimi/drylab
$ brew install drylab

Update

To update the Drylab CLI to the latest version, run:

$ brew update drylab

Usage

$ drylab [command] [options]

Use --help with any command to see options:

$ drylab reproduce --help

Authorisation

You can either use the CLI as it is for free with significant rate limits, or add a Gemini API key to a file called .env inside the root directory of your project:

GEMINI_API_KEY="YourSuperSecretAPIKey"
PreviousPOST /datasetsNextConfig file

Last updated 4 days ago

🌵